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Uncharacterized Protein Conserved in Bacteria, COG3792 from Neisseria meningitidis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 289 0.8M Sodium phosphate, 1.2M Potassium phosphate, 0.1M Sodium acetate pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.31 46.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.822 α = 90 b = 67.153 β = 90 c = 93.777 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-3 mirrors 2006-11-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97920 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 31.61 99.5 0.087 6.7 15.5 24290 24290
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 96.3 0.627 2.17 11.2 2300
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 31.61 21768 21768 2449 99.44 0.2063 0.2063 0.20148 0.24917 0.2543 RANDOM 38.381
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.57 2.24 -1.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.137 r_dihedral_angle_4_deg 19.201 r_dihedral_angle_3_deg 16.462 r_dihedral_angle_1_deg 5.606 r_scangle_it 3.539 r_scbond_it 2.374 r_mcangle_it 1.565 r_angle_refined_deg 1.446 r_mcbond_it 1.026 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.137 r_dihedral_angle_4_deg 19.201 r_dihedral_angle_3_deg 16.462 r_dihedral_angle_1_deg 5.606 r_scangle_it 3.539 r_scbond_it 2.374 r_mcangle_it 1.565 r_angle_refined_deg 1.446 r_mcbond_it 1.026 r_nbtor_refined 0.305 r_symmetry_vdw_refined 0.237 r_nbd_refined 0.217 r_xyhbond_nbd_refined 0.173 r_symmetry_hbond_refined 0.12 r_chiral_restr 0.103 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2101 Nucleic Acid Atoms Solvent Atoms 196 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELXCD phasing SHELXD phasing SHELXE model building MLPHARE phasing SOLVE phasing RESOLVE phasing PHENIX phasing