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Crystal Structure of coenzyme F420H2 oxidase (FprA), a diiron flavoprotein, reduced state
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 283 0.001M DDT, 0.2M ammonium sulfate, 0.1M MES/KOH, 30% PEG MME 5000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 283K
Crystal Properties Matthews coefficient Solvent content 2.2 44.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.798 α = 90 b = 123.113 β = 103.4 c = 135.864 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MARMOSAIC 225 mm CCD mirrors 2006-04-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 20 97.6 6.6 13.7 2.6 103861 103861
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.35 97.8 36.4 1.8 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 20 103861 103861 5530 78.87 0.2061 0.20281 0.2033 0.26907 0.2685 RANDOM 43.975
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.85 -1.61 -1.39 -1.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.345 r_dihedral_angle_3_deg 18.759 r_dihedral_angle_4_deg 18.62 r_dihedral_angle_1_deg 5.908 r_scangle_it 1.914 r_angle_refined_deg 1.363 r_scbond_it 1.221 r_mcangle_it 0.811 r_mcbond_it 0.457 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.345 r_dihedral_angle_3_deg 18.759 r_dihedral_angle_4_deg 18.62 r_dihedral_angle_1_deg 5.908 r_scangle_it 1.914 r_angle_refined_deg 1.363 r_scbond_it 1.221 r_mcangle_it 0.811 r_mcbond_it 0.457 r_nbtor_refined 0.305 r_symmetry_vdw_refined 0.217 r_nbd_refined 0.205 r_xyhbond_nbd_refined 0.153 r_symmetry_hbond_refined 0.141 r_chiral_restr 0.095 r_metal_ion_refined 0.037 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 25296 Nucleic Acid Atoms Solvent Atoms 365 Heterogen Atoms 268
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection XDS data reduction XDS data scaling EPMR phasing