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Human histone acetyltransferase 1 (HAT1)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BOB PDB entry 1BOB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 300 12% PEG 20000, 0.1M MES pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 300K
Crystal Properties Matthews coefficient Solvent content 3.07 59.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.557 α = 90 b = 155.425 β = 90 c = 53.617 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2007-01-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X12B 1.10000 NSLS X12B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 47.35 99 0.1 8.6 4.5 76880 76880
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1BOB 1.9 47.35 68545 68545 3584 92.92 0.1846 0.1846 0.18224 0.22834 0.228 RANDOM 19.911
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.778 r_dihedral_angle_4_deg 16.425 r_dihedral_angle_3_deg 13.211 r_dihedral_angle_1_deg 6.298 r_scangle_it 3.068 r_scbond_it 2.092 r_angle_refined_deg 1.427 r_mcangle_it 1.23 r_mcbond_it 0.794 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.778 r_dihedral_angle_4_deg 16.425 r_dihedral_angle_3_deg 13.211 r_dihedral_angle_1_deg 6.298 r_scangle_it 3.068 r_scbond_it 2.092 r_angle_refined_deg 1.427 r_mcangle_it 1.23 r_mcbond_it 0.794 r_nbtor_refined 0.302 r_nbd_refined 0.196 r_xyhbond_nbd_refined 0.159 r_symmetry_vdw_refined 0.149 r_symmetry_hbond_refined 0.125 r_chiral_restr 0.102 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5477 Nucleic Acid Atoms Solvent Atoms 782 Heterogen Atoms 123
Software Software Software Name Purpose REFMAC refinement CrystalClear data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing