2PRU
NMR Structure of Human apoS100B at 10C
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_13C-separated_NOESY | 1-2 mM U-13C,U-15N S100B, 50 mM KCl, 90%H2O/10%D2O | 90% H2O/10% D2O | 50 mM | 7.2 | ambient | 283 | |
2 | 3D_15N-separated_NOESY | 1-2 mM U-13C,U-15N S100B, 50 mM KCl, 90%H2O/10%D2O | 90% H2O/10% D2O | 50 mM | 7.2 | ambient | 283 | |
3 | 15N IPAP-HSQC for Residual dipolar couplings | 0.7 mM U-15N S100B, 50 mM KCl, 12 mg/ml PF1 Phage, 90%H2O/10%D2O | 90% H2O/10% D2O | 50 mM | 7.2 | ambient | 283 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Varian | INOVA | 800 |
NMR Refinement | ||
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Method | Details | Software |
CNS - non-crystallograqphic symmetry for the homodimer, distance geometry, simulated annealing, molecular dynamics. Final Refinement in the presence of explicit solvent. | 2504 NOEs, 124 Hbond distance restraints | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Additional NMR Experimental Information | |
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Details | The structure was determined using triple-resonance NMR spectroscopy. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | 2.3 | F. Delaglio, S. Grzesiek, G. W. Vuister, G. Zhu, J. Pfeifer and A. Bax |
2 | collection | VNMR | 6.1B | Varian Associates |
3 | data analysis | NMRView | 5.2.2 | B.A. Johnson and R.A. Blevins |
4 | refinement | CNS | 1.1 | Brunger AT,Adams PD, Clore GM, DeLano WL, Gros P, Grosse-Kunstleve RW,Jiang JS,Kuszewski J, Nilges M, Pannu NS, Read, RJ, Rice, LM, Simonson T, and Warren, GL |
5 | refinement | RECOORD | 1 | Nederveen AJ, Doreleijers JF, Vranken W, Miller Z, Spronk CAEM, Nabuurs SB, G ntert P, Livny M, Markley JL, Nilges M, Ulrich EL, Kaptein R, Bonvin AMJJ |