☰ Navigation Tabs
Crystal structure of a putative phosphoenolpyruvate phosphonomutase (ncgl1015, cgl1060) from corynebacterium glutamicum atcc 13032 at 1.80 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 NANODROP, 2.0M (NH4)2SO4, 2.0% PEG 400, 0.1M HEPES pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.91 68.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.52 α = 90 b = 94.56 β = 90 c = 107.97 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-06-21 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97901, 0.97935 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 29.45 99.6 0.056 10.6 78759 -3 25.945
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 99.4 0.411 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 29.45 78697 3957 99.81 0.145 0.144 0.1541 0.168 0.1783 RANDOM 25.066
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.87 -0.48 1.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.254 r_dihedral_angle_4_deg 17.297 r_dihedral_angle_3_deg 11.224 r_scangle_it 6.768 r_dihedral_angle_1_deg 5.374 r_scbond_it 4.759 r_mcangle_it 2.511 r_mcbond_it 2.008 r_angle_refined_deg 1.57 r_angle_other_deg 1.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.254 r_dihedral_angle_4_deg 17.297 r_dihedral_angle_3_deg 11.224 r_scangle_it 6.768 r_dihedral_angle_1_deg 5.374 r_scbond_it 4.759 r_mcangle_it 2.511 r_mcbond_it 2.008 r_angle_refined_deg 1.57 r_angle_other_deg 1.005 r_mcbond_other 0.56 r_symmetry_vdw_other 0.296 r_nbd_refined 0.22 r_nbd_other 0.202 r_nbtor_refined 0.177 r_xyhbond_nbd_refined 0.158 r_symmetry_vdw_refined 0.158 r_symmetry_hbond_refined 0.141 r_chiral_restr 0.095 r_nbtor_other 0.088 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3736 Nucleic Acid Atoms Solvent Atoms 522 Heterogen Atoms 97
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction SHELXD phasing SHARP phasing