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Crystal Structure of [KS3][AT3] didomain from module 3 of 6-deoxyerthronolide B synthase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 0.1M HEPES pH7.0, 0.2M Li2SO4, 25% PEG3350, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.66 53.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.203 α = 90 b = 139.005 β = 106.14 c = 102.342 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2005-06-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.979 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 99.9 0.136 8.4 3.7 228717 228471
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.69 100 0.688 3.09 3.7 6207
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.59 41.52 58910 3145 99.46 0.21679 0.21401 0.2096 0.26806 0.2612 RANDOM 21.862
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 0.19 -0.21 0.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.094 r_dihedral_angle_4_deg 22.388 r_dihedral_angle_3_deg 21.235 r_dihedral_angle_1_deg 8.679 r_scangle_it 3.93 r_scbond_it 2.347 r_angle_refined_deg 1.942 r_mcangle_it 1.497 r_mcbond_it 0.906 r_nbtor_refined 0.322
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.094 r_dihedral_angle_4_deg 22.388 r_dihedral_angle_3_deg 21.235 r_dihedral_angle_1_deg 8.679 r_scangle_it 3.93 r_scbond_it 2.347 r_angle_refined_deg 1.942 r_mcangle_it 1.497 r_mcbond_it 0.906 r_nbtor_refined 0.322 r_symmetry_hbond_refined 0.315 r_symmetry_vdw_refined 0.29 r_nbd_refined 0.267 r_xyhbond_nbd_refined 0.185 r_chiral_restr 0.133 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12928 Nucleic Acid Atoms Solvent Atoms 194 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing