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Crystal Structure of Wild-type E.coli GS in Complex with ADP and Glucose(wtGSc)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2QZS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.6 277 40%(w/v) PEG 4000, 0.2 M Na tartrate and 0.1 M HEPPSO (pH 7.6), VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 5.7 78.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 126.827 α = 90 b = 126.827 β = 90 c = 151.869 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2006-07-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 5ID-B 1.0 APS 5ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.258 97.13 99.9 0.052 11.8 5.1 56077 4.5 41.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.258 2.34 99.8 0.287 4.5 4.9 5555
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2QZS 2.258 97.13 4.5 56062 2845 99.81 0.182 0.1631 0.163 0.1639 0.179 0.1809 RANDOM 37.998
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.13 1.13 -2.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.092 r_dihedral_angle_4_deg 21.528 r_dihedral_angle_3_deg 17.588 r_dihedral_angle_1_deg 5.728 r_mcangle_it 1.331 r_angle_refined_deg 1.253 r_scangle_it 1.09 r_mcbond_it 0.786 r_scbond_it 0.772 r_nbtor_refined 0.325
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.092 r_dihedral_angle_4_deg 21.528 r_dihedral_angle_3_deg 17.588 r_dihedral_angle_1_deg 5.728 r_mcangle_it 1.331 r_angle_refined_deg 1.253 r_scangle_it 1.09 r_mcbond_it 0.786 r_scbond_it 0.772 r_nbtor_refined 0.325 r_nbd_refined 0.233 r_symmetry_vdw_refined 0.206 r_xyhbond_nbd_refined 0.191 r_symmetry_hbond_refined 0.181 r_chiral_restr 0.104 r_bond_refined_d 0.008 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3738 Nucleic Acid Atoms Solvent Atoms 335 Heterogen Atoms 150
Software Software Software Name Purpose d*TREK data scaling DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection