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Crystal structure of the N-terminal region (19..243) of sensor protein KdpD from Pseudomonas syringae pv. tomato str. DC3000
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 291 1M Ammonium sulfate, 0.5% PEG 8000, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.97 58.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.859 α = 90 b = 56.859 β = 90 c = 372.783 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2007-08-10 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97940, 0.97950 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 30 99.1 0.089 24.3 10.1 28395 28395 39.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.34 97.2 0.234 5.24 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.3 30 26955 26955 1440 99.01 0.17303 0.17303 0.17073 0.1769 0.21642 0.2266 RANDOM 17.391
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.13 0.13 -0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.131 r_dihedral_angle_4_deg 14.491 r_dihedral_angle_3_deg 14.433 r_dihedral_angle_1_deg 5.865 r_scangle_it 3.252 r_scbond_it 2.272 r_angle_refined_deg 1.53 r_mcangle_it 1.327 r_mcbond_it 1.047 r_angle_other_deg 0.989
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.131 r_dihedral_angle_4_deg 14.491 r_dihedral_angle_3_deg 14.433 r_dihedral_angle_1_deg 5.865 r_scangle_it 3.252 r_scbond_it 2.272 r_angle_refined_deg 1.53 r_mcangle_it 1.327 r_mcbond_it 1.047 r_angle_other_deg 0.989 r_symmetry_vdw_other 0.359 r_symmetry_hbond_refined 0.222 r_nbd_refined 0.21 r_nbd_other 0.197 r_mcbond_other 0.195 r_xyhbond_nbd_refined 0.18 r_nbtor_refined 0.163 r_nbtor_other 0.089 r_symmetry_vdw_refined 0.082 r_chiral_restr 0.081 r_bond_refined_d 0.017 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3222 Nucleic Acid Atoms Solvent Atoms 436 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL2Map phasing ARP/wARP model building