☰ Navigation Tabs
Crystal Structure of PtlH with Fe/oxalylglycine and ent-1-deoxypentalenic acid bound
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 sitting drop 7.5 282 100mM HEPES, 200mM MgCl2, 20% PEG 3350, pH 7.5, sitting drop, temperature 282K
Crystal Properties Matthews coefficient Solvent content 2.34 47.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.951 α = 90 b = 89.387 β = 90 c = 48.77 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ Rigaku Osmic Confocal Mirrors 2006-12-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 30 90.7 0.031 18.8 2.2 37311
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 39.2 0.219 2 1580
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.65 30 36176 1842 96.33 0.183 0.182 0.1805 0.209 0.2089 RANDOM 20.372
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.55 0.93 -0.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.698 r_dihedral_angle_4_deg 18.426 r_dihedral_angle_3_deg 12.733 r_dihedral_angle_1_deg 5.997 r_scangle_it 2.531 r_scbond_it 1.597 r_angle_refined_deg 1.181 r_mcangle_it 1.036 r_mcbond_it 0.62 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.698 r_dihedral_angle_4_deg 18.426 r_dihedral_angle_3_deg 12.733 r_dihedral_angle_1_deg 5.997 r_scangle_it 2.531 r_scbond_it 1.597 r_angle_refined_deg 1.181 r_mcangle_it 1.036 r_mcbond_it 0.62 r_nbtor_refined 0.304 r_xyhbond_nbd_refined 0.232 r_nbd_refined 0.21 r_symmetry_vdw_refined 0.169 r_symmetry_hbond_refined 0.126 r_chiral_restr 0.081 r_metal_ion_refined 0.023 r_bond_refined_d 0.009 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2103 Nucleic Acid Atoms Solvent Atoms 409 Heterogen Atoms 30
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling COMO phasing REFMAC refinement PDB_EXTRACT data extraction