2RNO
Solution Structure of the N-terminal SAP Domain of SUMO E3 Ligases from Oryza sativa
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.7 mM [U-13C; U-15N] Siz1, 20 mM potassium phosphate, 300 mM sodium chloride, 2 mM DTT | 92% H2O/8% D2O | 6.1 | ambient | 283 | ||
2 | 3D 1H-15N NOESY | 0.7 mM [U-13C; U-15N] Siz1, 20 mM potassium phosphate, 300 mM sodium chloride, 2 mM DTT | 92% H2O/8% D2O | 6.1 | ambient | 283 | ||
3 | 3D HNCO | 0.7 mM [U-13C; U-15N] Siz1, 20 mM potassium phosphate, 300 mM sodium chloride, 2 mM DTT | 92% H2O/8% D2O | 6.1 | ambient | 283 | ||
4 | 3D HNCA | 0.7 mM [U-13C; U-15N] Siz1, 20 mM potassium phosphate, 300 mM sodium chloride, 2 mM DTT | 92% H2O/8% D2O | 6.1 | ambient | 283 | ||
5 | 3D CBCA(CO)NH | 0.7 mM [U-13C; U-15N] Siz1, 20 mM potassium phosphate, 300 mM sodium chloride, 2 mM DTT | 92% H2O/8% D2O | 6.1 | ambient | 283 | ||
6 | 3D 13C-edited 1H-15N NOESY | 0.7 mM [U-13C; U-15N] Siz1, 20 mM potassium phosphate, 300 mM sodium chloride, 2 mM DTT | 92% H2O/8% D2O | 6.1 | ambient | 283 | ||
7 | 2D 1H-13C HSQC | 0.7 mM [U-13C; U-15N] Siz1, 20 mM potassium phosphate, 300 mM sodium chloride, 2 mM DTT | 100% D2O | 6.1 | ambient | 283 | ||
8 | 3D HCCH-TOCSY | 0.7 mM [U-13C; U-15N] Siz1, 20 mM potassium phosphate, 300 mM sodium chloride, 2 mM DTT | 100% D2O | 6.1 | ambient | 283 | ||
9 | 4D 1H-13C NOESY | 0.7 mM [U-13C; U-15N] Siz1, 20 mM potassium phosphate, 300 mM sodium chloride, 2 mM DTT | 100% D2O | 6.1 | ambient | 283 | ||
10 | 3D HCABGCO | 0.7 mM [U-13C; U-15N] Siz1, 20 mM potassium phosphate, 300 mM sodium chloride, 2 mM DTT | 100% D2O | 6.1 | ambient | 283 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DMX | 750 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | XwinNMR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 3.1 | Bruker Biospin |
2 | processing | NMRPipe | released at Feb 10, 2006 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
3 | data analysis | TALOS | 2003.027.13.05 | Cornilescu, Delaglio and Bax |
4 | peak picking | Sparky | 3.113 | Goddard |
5 | chemical shift assignment | Sparky | 3.113 | Goddard |
6 | peak picking | PIPP | 4.3.6 | Garrett |
7 | chemical shift assignment | PIPP | 4.3.6 | Garrett |
8 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
9 | refinement | CYANA | 2.1 | Guntert, Mumenthaler, Wuthrich |
10 | data analysis | AQUA | 3.2 | Rullmann, Doreleijers and Kaptein |
11 | data analysis | ProcheckNMR | 3.5.4 | Laskowski and MacArthur |