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Refinement of RNA binding domain in human Tra2 beta protein
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 1H-15N NOESY 1 mM [U-100% 13C; U-100% 15N] Human transformer 2 beta-1 90% H2O/10% D2O 100 7.0 ambient 298 2 3D 1H-13C NOESY 1 mM [U-100% 13C; U-100% 15N] Human transformer 2 beta-1 90% H2O/10% D2O 100 7.0 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800
NMR Refinement Method Details Software DGSA-distance geometry simulated annealing Amber
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 refinement Amber 9 Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, Kollm 2 collection XwinNMR 3.6 Bruker Biospin 3 processing NMRPipe 20060801 Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 data analysis NMRView 5.0.4 Johnson, One Moon Scientific 5 data analysis KUJIRA 0.9843 N. Kobayashi 6 structure solution CYANA 2.1 Guntert, Mumenthaler and Wuthrich