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Crystal structure of human CDK2 complexed with a thiazolidinone inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 277 VAPOUR DIFFUSION AT 4 DEG C, 0.1 M HEPES PH 7.0, 1M LITHIUM SULPHATE
Crystal Properties Matthews coefficient Solvent content 3 59.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 160.559 α = 90 b = 160.292 β = 90 c = 66.509 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2003-06-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 30 94.3 0.22 6.4 3.4 44067
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 2.72 15 41563 2230 93.4 0.211 0.208 0.2019 0.269 0.2605 RANDOM 22.56
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 -0.15 0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.395 r_dihedral_angle_3_deg 19.583 r_dihedral_angle_4_deg 18.092 r_dihedral_angle_1_deg 6.363 r_scangle_it 2.616 r_scbond_it 1.559 r_angle_refined_deg 1.459 r_mcangle_it 1.252 r_mcbond_it 0.696 r_nbtor_refined 0.315
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.395 r_dihedral_angle_3_deg 19.583 r_dihedral_angle_4_deg 18.092 r_dihedral_angle_1_deg 6.363 r_scangle_it 2.616 r_scbond_it 1.559 r_angle_refined_deg 1.459 r_mcangle_it 1.252 r_mcbond_it 0.696 r_nbtor_refined 0.315 r_symmetry_vdw_refined 0.259 r_nbd_refined 0.223 r_xyhbond_nbd_refined 0.142 r_symmetry_hbond_refined 0.129 r_chiral_restr 0.102 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8930 Nucleic Acid Atoms Solvent Atoms 201 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling