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Crystal structure of human calcium-calmodulin-dependent protein kinase II gamma
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BDW PDB ENTRY 1BDW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 0.10M MAGNESIUM CHLORIDE, 0.1M HEPES PH7, 20% PEG6K, 10% ETHYLENE GLYCOL
Crystal Properties Matthews coefficient Solvent content 2.59 50.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.703 α = 90 b = 117.226 β = 90 c = 75.968 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2007-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 42.33 100 0.11 10.4 4 18326
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.37 100 0.72 1.9 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1BDW 2.25 35.62 17388 936 100 0.179 0.176 0.1825 0.241 0.2524 RANDOM 33.45
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.6 -0.43 -1.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.404 r_dihedral_angle_4_deg 18.818 r_dihedral_angle_3_deg 14.653 r_dihedral_angle_1_deg 6.366 r_angle_other_deg 1.33 r_angle_refined_deg 1.296 r_symmetry_vdw_refined 0.259 r_symmetry_vdw_other 0.192 r_symmetry_hbond_refined 0.192 r_nbd_refined 0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.404 r_dihedral_angle_4_deg 18.818 r_dihedral_angle_3_deg 14.653 r_dihedral_angle_1_deg 6.366 r_angle_other_deg 1.33 r_angle_refined_deg 1.296 r_symmetry_vdw_refined 0.259 r_symmetry_vdw_other 0.192 r_symmetry_hbond_refined 0.192 r_nbd_refined 0.19 r_nbd_other 0.18 r_nbtor_refined 0.174 r_xyhbond_nbd_refined 0.132 r_nbtor_other 0.089 r_chiral_restr 0.075 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2417 Nucleic Acid Atoms Solvent Atoms 110 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing