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First and second Ig domains from human Robo1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 18-20% PEG 3350, 0.2M K THIOCYNATE, 0.1M MES, PH=6.5
Crystal Properties Matthews coefficient Solvent content 2.8 56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.23 α = 90 b = 68.53 β = 90 c = 103.88 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRROR 2006-09-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 30 93.1 0.06 11.1 1.9 32973
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.6 71.5 0.32 2.5 1.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 2.5 30 9334 469 98.7 0.229 0.227 0.222 0.28 0.2741 RANDOM 41.73
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.45 3.94 -2.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.237 r_dihedral_angle_3_deg 22.731 r_dihedral_angle_4_deg 21.014 r_dihedral_angle_1_deg 8.256 r_scangle_it 3.12 r_scbond_it 1.718 r_angle_refined_deg 1.602 r_mcangle_it 1.211 r_mcbond_it 0.715 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.237 r_dihedral_angle_3_deg 22.731 r_dihedral_angle_4_deg 21.014 r_dihedral_angle_1_deg 8.256 r_scangle_it 3.12 r_scbond_it 1.718 r_angle_refined_deg 1.602 r_mcangle_it 1.211 r_mcbond_it 0.715 r_nbtor_refined 0.307 r_symmetry_hbond_refined 0.306 r_nbd_refined 0.234 r_symmetry_vdw_refined 0.217 r_xyhbond_nbd_refined 0.196 r_chiral_restr 0.113 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1627 Nucleic Acid Atoms Solvent Atoms 64 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling SHARP phasing