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crystal structure of the chimerical mutant CapABK55M protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ION PDB ENTRY 1ION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 20% PEG1000 100MM HEPES PH7.5 200MM GLYCINE
Crystal Properties Matthews coefficient Solvent content 3.32 62.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 163.2 α = 90 b = 163.2 β = 90 c = 57.2 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2007-05-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 20 99.4 0.15 8 4 23263 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.7 96.4 0.59 1.9 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1ION 2.6 19.79 22099 1164 100 0.208 0.204 0.2002 0.27 0.2633 RANDOM 28.42
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.091 r_dihedral_angle_4_deg 20.341 r_dihedral_angle_3_deg 18.061 r_dihedral_angle_1_deg 9.073 r_scangle_it 3.283 r_scbond_it 2.021 r_angle_refined_deg 1.87 r_mcangle_it 1.556 r_mcbond_it 0.907 r_nbtor_refined 0.321
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.091 r_dihedral_angle_4_deg 20.341 r_dihedral_angle_3_deg 18.061 r_dihedral_angle_1_deg 9.073 r_scangle_it 3.283 r_scbond_it 2.021 r_angle_refined_deg 1.87 r_mcangle_it 1.556 r_mcbond_it 0.907 r_nbtor_refined 0.321 r_nbd_refined 0.238 r_symmetry_vdw_refined 0.198 r_symmetry_hbond_refined 0.19 r_xyhbond_nbd_refined 0.161 r_chiral_restr 0.134 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3923 Nucleic Acid Atoms Solvent Atoms 112 Heterogen Atoms 56
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing