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P4 PROTEIN FROM BACTERIOPHAGE PHI12 S252A mutant in complex with ATP AND MG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.8 10% PEG 1500, 100MM NAAC PH 4.8, 5MM ATP, 5MM MGCL
Crystal Properties Matthews coefficient Solvent content 2.6 52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.244 α = 90 b = 129.387 β = 90 c = 158.978 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2006-05-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 30 100 0.13 15 7.8 98926 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.23 100 0.87 1.8 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 2.15 100.5 56185 2994 99.9 0.198 0.195 0.247 RANDOM 35.63
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.93 1.64 -0.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.233 r_dihedral_angle_3_deg 14.572 r_dihedral_angle_4_deg 12.859 r_dihedral_angle_1_deg 6.871 r_scangle_it 2.482 r_scbond_it 1.694 r_mcangle_it 1.387 r_angle_refined_deg 1.311 r_mcbond_it 1.271 r_angle_other_deg 0.934
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.233 r_dihedral_angle_3_deg 14.572 r_dihedral_angle_4_deg 12.859 r_dihedral_angle_1_deg 6.871 r_scangle_it 2.482 r_scbond_it 1.694 r_mcangle_it 1.387 r_angle_refined_deg 1.311 r_mcbond_it 1.271 r_angle_other_deg 0.934 r_symmetry_vdw_refined 0.24 r_symmetry_vdw_other 0.23 r_nbd_refined 0.207 r_nbd_other 0.201 r_nbtor_refined 0.173 r_symmetry_hbond_refined 0.164 r_xyhbond_nbd_refined 0.163 r_chiral_restr 0.121 r_nbtor_other 0.083 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6849 Nucleic Acid Atoms Solvent Atoms 590 Heterogen Atoms 96
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CNS phasing