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BJFIXLH IN UNLIGANDED FERROUS FORM
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1XJ3 PDB ENTRY 1XJ3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 298 NACL, PEI, CAPSO, PH 9.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K
Crystal Properties Matthews coefficient Solvent content 2.3 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.646 α = 73.19 b = 49.814 β = 71.12 c = 58.76 γ = 71.74
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2005-04-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 96.1 0.05 38 3.8 44159 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 95.7 0.42 3 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1XJ3 1.81 46.27 40327 2114 96.1 0.199 0.197 0.1979 0.247 0.2488 RANDOM 40.58
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.186 r_dihedral_angle_4_deg 18.107 r_dihedral_angle_3_deg 15.351 r_dihedral_angle_1_deg 5.98 r_scangle_it 3.77 r_scbond_it 2.702 r_angle_refined_deg 1.985 r_mcangle_it 1.454 r_mcbond_it 0.927 r_nbtor_refined 0.322
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.186 r_dihedral_angle_4_deg 18.107 r_dihedral_angle_3_deg 15.351 r_dihedral_angle_1_deg 5.98 r_scangle_it 3.77 r_scbond_it 2.702 r_angle_refined_deg 1.985 r_mcangle_it 1.454 r_mcbond_it 0.927 r_nbtor_refined 0.322 r_symmetry_hbond_refined 0.283 r_nbd_refined 0.23 r_symmetry_vdw_refined 0.225 r_xyhbond_nbd_refined 0.159 r_chiral_restr 0.126 r_bond_refined_d 0.019 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3329 Nucleic Acid Atoms Solvent Atoms 332 Heterogen Atoms 175
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling EPMR phasing