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The structure of the lipid binding protein Ce-FAR-7 from Caenorhabditis elegans
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 20MM TRIS PH 7.8-8.5, 2.1-2.9M AMMONIUM SULFATE
Crystal Properties Matthews coefficient Solvent content 2.3 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.85 α = 90 b = 41.6 β = 90 c = 101.74 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH PT COATED MIRRORS IN KB GEOMETRY 2008-06-15 M SINGLE WAVELENGTH 2 1 x-ray CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 ESRF ID23-2 2 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 50 97.7 0.09 10.13 3.4 13757 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.79 1.9 94.6 0.59 2.19 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.8 50.9 13156 690 99.4 0.174 0.171 0.1666 0.251 0.2423 RANDOM 18.44
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.76 -0.16 0.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.541 r_dihedral_angle_4_deg 30.735 r_dihedral_angle_3_deg 14.615 r_scangle_it 6.15 r_dihedral_angle_1_deg 4.725 r_scbond_it 4.099 r_mcangle_it 2.608 r_mcbond_it 1.695 r_angle_refined_deg 1.676 r_chiral_restr 0.124
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.541 r_dihedral_angle_4_deg 30.735 r_dihedral_angle_3_deg 14.615 r_scangle_it 6.15 r_dihedral_angle_1_deg 4.725 r_scbond_it 4.099 r_mcangle_it 2.608 r_mcbond_it 1.695 r_angle_refined_deg 1.676 r_chiral_restr 0.124 r_bond_refined_d 0.022 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1055 Nucleic Acid Atoms Solvent Atoms 181 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling autoSHARP phasing