X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2UUQPDB ENTRY 2UUQ

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1514% PEG 4000, 0.1M NA ACETATE, PH 5.0, 200 MM AMMONIUM SULFATE, 1% ISOPROPYL ALCOHOL
Crystal Properties
Matthews coefficientSolvent content
2.0941

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 53.713α = 96.56
b = 84.9β = 90.02
c = 90.158γ = 108.43
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray110CCDADSC CCDMIRRORS2008-12-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.3.1ALS8.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.750960.0319.91.816420021.2
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.7393.10.332.11.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2UUQ1.789.441425401565495.860.205270.199250.2593RANDOM22.151
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.19-0.96-0.4-0.570.45
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.874
r_dihedral_angle_4_deg17.734
r_dihedral_angle_3_deg13.864
r_sphericity_free8.658
r_dihedral_angle_1_deg5.716
r_sphericity_bonded5.139
r_scangle_it4.738
r_scbond_it3.556
r_rigid_bond_restr2.492
r_mcangle_it2.209
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.874
r_dihedral_angle_4_deg17.734
r_dihedral_angle_3_deg13.864
r_sphericity_free8.658
r_dihedral_angle_1_deg5.716
r_sphericity_bonded5.139
r_scangle_it4.738
r_scbond_it3.556
r_rigid_bond_restr2.492
r_mcangle_it2.209
r_angle_refined_deg1.82
r_mcbond_it1.487
r_chiral_restr0.115
r_bond_refined_d0.019
r_gen_planes_refined0.01
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms11952
Nucleic Acid Atoms
Solvent Atoms851
Heterogen Atoms276

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing