☰ Navigation Tabs
Structure of the complex of RBP4 with linoleic acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QAB PDB ENTRY 1QAB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 3.5-4.2M NACL, 0.1M HEPES, PH 7.2
Crystal Properties Matthews coefficient Solvent content 3.7 40.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.558 α = 90 b = 102.558 β = 90 c = 73.355 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 155 CCD MARRESEARCH 2007-06-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.64 50 99.4 0.07 12.21 3.8 26657 -3 27.05
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.64 1.74 97.2 1.02 1.29 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1QAB 1.8 56.52 25312 1345 99.92 0.18887 0.18682 0.1904 0.22676 0.2271 RANDOM 21.875
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.29 0.15 0.29 -0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.318 r_dihedral_angle_4_deg 18.638 r_dihedral_angle_3_deg 14.492 r_dihedral_angle_1_deg 7.817 r_scangle_it 4.974 r_scbond_it 3.697 r_mcangle_it 2.362 r_angle_refined_deg 2.305 r_mcbond_it 2.039 r_angle_other_deg 1.238
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.318 r_dihedral_angle_4_deg 18.638 r_dihedral_angle_3_deg 14.492 r_dihedral_angle_1_deg 7.817 r_scangle_it 4.974 r_scbond_it 3.697 r_mcangle_it 2.362 r_angle_refined_deg 2.305 r_mcbond_it 2.039 r_angle_other_deg 1.238 r_mcbond_other 0.451 r_symmetry_hbond_refined 0.341 r_symmetry_vdw_other 0.286 r_xyhbond_nbd_refined 0.254 r_symmetry_vdw_refined 0.235 r_nbd_refined 0.223 r_nbd_other 0.219 r_nbtor_refined 0.184 r_chiral_restr 0.153 r_nbtor_other 0.093 r_bond_refined_d 0.03 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1407 Nucleic Acid Atoms Solvent Atoms 239 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing