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Structure and metal-loading of a soluble periplasm cupro-protein: Zn- CucA-closed (SeMet)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.8 0.1M TRIS PH8.8, 22% PEG 8000, 0.5MM ZNSO4
Crystal Properties Matthews coefficient Solvent content 2.3 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.75 α = 90 b = 96.97 β = 90 c = 114.51 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.06 57 96.3 0.097 9.6 3.4 31723 28.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.06 2.17 80.3 0.32 2.5 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 2.06 42.11 30085 1603 96.01 0.19224 0.18981 0.2012 0.23689 0.2491 RANDOM 36.305
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.89 1.1 -1.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.584 r_dihedral_angle_4_deg 19.592 r_dihedral_angle_3_deg 14.445 r_dihedral_angle_1_deg 6.351 r_scangle_it 2.695 r_scbond_it 1.752 r_angle_refined_deg 1.298 r_mcangle_it 0.95 r_mcbond_it 0.525 r_chiral_restr 0.087
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.584 r_dihedral_angle_4_deg 19.592 r_dihedral_angle_3_deg 14.445 r_dihedral_angle_1_deg 6.351 r_scangle_it 2.695 r_scbond_it 1.752 r_angle_refined_deg 1.298 r_mcangle_it 0.95 r_mcbond_it 0.525 r_chiral_restr 0.087 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3661 Nucleic Acid Atoms Solvent Atoms 316 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SHELX phasing