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Crystal structure of apo AMA1 mutant (Tyr230Ala) from Toxoplasma gondii
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 21% PEG3350, 100 MM TRIS PH 7.4
Crystal Properties Matthews coefficient Solvent content 2.12 41.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.52 α = 71.89 b = 76.09 β = 73.37 c = 88.78 γ = 73.5
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 38.59 96.9 0.1 7.2 2.4 63415 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.48 96.1 0.46 1.9 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.45 38.59 53192 2834 96.98 0.21635 0.2116 0.212 0.30493 0.3023 RANDOM 28.849
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 -0.03 -0.02 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.302 r_dihedral_angle_4_deg 19.425 r_dihedral_angle_3_deg 19.411 r_dihedral_angle_1_deg 7.361 r_scangle_it 2.902 r_scbond_it 1.798 r_angle_refined_deg 1.622 r_mcangle_it 1.299 r_mcbond_it 0.704 r_chiral_restr 0.107
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.302 r_dihedral_angle_4_deg 19.425 r_dihedral_angle_3_deg 19.411 r_dihedral_angle_1_deg 7.361 r_scangle_it 2.902 r_scbond_it 1.798 r_angle_refined_deg 1.622 r_mcangle_it 1.299 r_mcbond_it 0.704 r_chiral_restr 0.107 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12567 Nucleic Acid Atoms Solvent Atoms 529 Heterogen Atoms 56
Software Software Software Name Purpose REFMAC refinement PHASER phasing