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Crystal structure of Arabidopsis CnfU involved in iron-sulfur cluster biosynthesis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 277 PEG 1000, MgCl2, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.28 45.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.546 α = 90 b = 57.394 β = 90 c = 61.303 γ = 90
Symmetry Space Group P 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Bruker DIP-6040 2004-12-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.9 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 61.31 99.9 34580 26.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.348 1.383 97.97
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.35 61.31 32814 1766 99.75 0.13671 0.13671 0.13477 0.1367 0.17338 0.1377 RANDOM 21.328
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 -0.21 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.698 r_dihedral_angle_4_deg 21.466 r_sphericity_free 14.982 r_dihedral_angle_3_deg 14.004 r_scangle_it 7.891 r_sphericity_bonded 7.332 r_dihedral_angle_1_deg 5.959 r_scbond_it 5.766 r_mcangle_it 4.119 r_rigid_bond_restr 3.389
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.698 r_dihedral_angle_4_deg 21.466 r_sphericity_free 14.982 r_dihedral_angle_3_deg 14.004 r_scangle_it 7.891 r_sphericity_bonded 7.332 r_dihedral_angle_1_deg 5.959 r_scbond_it 5.766 r_mcangle_it 4.119 r_rigid_bond_restr 3.389 r_mcbond_it 3.199 r_angle_refined_deg 1.634 r_symmetry_hbond_refined 0.475 r_xyhbond_nbd_refined 0.348 r_nbtor_refined 0.319 r_chiral_restr 0.292 r_symmetry_vdw_refined 0.289 r_nbd_refined 0.27 r_metal_ion_refined 0.139 r_bond_refined_d 0.03 r_symmetry_metal_ion_refined 0.026 r_gen_planes_refined 0.014
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1193 Nucleic Acid Atoms Solvent Atoms 283 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SHARP phasing