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Crystal Structure of tRNA(Met) Cytidine Acetyltransferase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 291 15% (w/v) PEG 5000 monomethyl ether, 50mM lithium sulfate, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.7 54.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.298 α = 90 b = 100.99 β = 90 c = 263.116 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2006-01-30 M MAD 2 1 x-ray 100 CCD ADSC QUANTUM 210 2006-02-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6A 0.9791,0.9797,0.9645 Photon Factory BL-6A 2 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.35 50 96.6 0.056 0.056 31.5 6.4 66310 66310 -3 46.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.35 2.43 92.1 0.373 0.373 3.9 6.1 6211
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.35 20 66111 66227 5079 95.8 0.235 0.2331 0.2735 0.2707 RANDOM 47.45
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.115 -4.562 7.676
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 24.08 c_improper_angle_d 3.41 c_scangle_it 3.265 c_mcangle_it 2.363 c_scbond_it 2.151 c_angle_deg 1.9179 c_mcbond_it 1.398 c_bond_d 0.0113 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 24.08 c_improper_angle_d 3.41 c_scangle_it 3.265 c_mcangle_it 2.363 c_scbond_it 2.151 c_angle_deg 1.9179 c_mcbond_it 1.398 c_bond_d 0.0113 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10407 Nucleic Acid Atoms Solvent Atoms 350 Heterogen Atoms 134
Software Software Software Name Purpose SOLVE phasing CNS refinement HKL-2000 data reduction HKL-2000 data scaling