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Crystal Structure of Ancestral Congerin Con-anc
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1C1F PDB ENTRY 1C1F
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.51 293 0. 1M MMT, 25%(w/v) PEG1500, 1mM lactose, pH 6.51, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.43 49.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.777 α = 90 b = 53.885 β = 90 c = 132.985 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU JUPITER 210 mirrors 2006-12-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL38B1 1.0000 SPring-8 BL38B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 98.2 0.055 42.8 20515 20146
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 89 0.211 6.7 1136
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1C1F 2.01 41.85 19065 1023 100 0.20801 0.20592 0.2068 0.24687 0.2508 RANDOM 35.425
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.36 6.39 -4.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.684 r_dihedral_angle_4_deg 26.565 r_dihedral_angle_3_deg 17.876 r_dihedral_angle_1_deg 6.733 r_scangle_it 2.697 r_scbond_it 1.822 r_angle_refined_deg 1.435 r_mcangle_it 1.176 r_mcbond_it 0.705 r_nbtor_refined 0.319
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.684 r_dihedral_angle_4_deg 26.565 r_dihedral_angle_3_deg 17.876 r_dihedral_angle_1_deg 6.733 r_scangle_it 2.697 r_scbond_it 1.822 r_angle_refined_deg 1.435 r_mcangle_it 1.176 r_mcbond_it 0.705 r_nbtor_refined 0.319 r_symmetry_vdw_refined 0.238 r_symmetry_hbond_refined 0.228 r_nbd_refined 0.2 r_xyhbond_nbd_refined 0.166 r_chiral_restr 0.099 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2150 Nucleic Acid Atoms Solvent Atoms 178 Heterogen Atoms 46
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling