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Crystal Structure of Ancestral Congerin Con-anc
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1IS3 PDB ENTRY 1IS3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 2.1M DL-malic acid, 1mM lactose, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.02 59.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.908 α = 90 b = 77.519 β = 90 c = 88.374 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU JUPITER 210 mirrors 2007-09-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL38B1 1.0000 SPring-8 BL38B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 99 0.047 42.2 29900 29601
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 92.8 0.399 2.8 1362
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1IS3 1.5 31.27 28098 1502 100 0.20448 0.20381 0.21714 0.2162 RANDOM 18.77
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.94 1.39 -0.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.774 r_dihedral_angle_4_deg 20.73 r_dihedral_angle_3_deg 14.167 r_dihedral_angle_1_deg 6.532 r_scangle_it 4.17 r_scbond_it 2.845 r_mcangle_it 1.841 r_angle_refined_deg 1.521 r_mcbond_it 1.37 r_nbtor_refined 0.315
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.774 r_dihedral_angle_4_deg 20.73 r_dihedral_angle_3_deg 14.167 r_dihedral_angle_1_deg 6.532 r_scangle_it 4.17 r_scbond_it 2.845 r_mcangle_it 1.841 r_angle_refined_deg 1.521 r_mcbond_it 1.37 r_nbtor_refined 0.315 r_symmetry_vdw_refined 0.265 r_nbd_refined 0.244 r_symmetry_hbond_refined 0.119 r_chiral_restr 0.11 r_xyhbond_nbd_refined 0.106 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1059 Nucleic Acid Atoms Solvent Atoms 123 Heterogen Atoms 23
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling