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Crystal structure of Fab wo2 bound to the n terminal domain of amyloid beta peptide (1-16)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 100mM MES, 25% (v/v) PEG 400, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.83 32.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.743 α = 90 b = 66.632 β = 90 c = 115.16 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm bent conical Si-mirror (Rh coating); bent cylindrical Ge(111) monochromator 2003-10-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C 1.54180 APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.59 20.12 99.19 0.118 14.3 5.1 53898 53462
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.593 1.634 92.23 0.263 2.7 3.2 3514
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.59 20.12 53462 53462 5263 99.19 0.21 0.192 0.188 0.1997 0.231 0.1958 RANDOM 13.355
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.02 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.98 r_dihedral_angle_4_deg 18.553 r_dihedral_angle_3_deg 11.529 r_dihedral_angle_1_deg 6.668 r_scangle_it 3.094 r_scbond_it 2.405 r_mcangle_it 1.416 r_angle_refined_deg 1.398 r_mcbond_it 1.159 r_angle_other_deg 0.885
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.98 r_dihedral_angle_4_deg 18.553 r_dihedral_angle_3_deg 11.529 r_dihedral_angle_1_deg 6.668 r_scangle_it 3.094 r_scbond_it 2.405 r_mcangle_it 1.416 r_angle_refined_deg 1.398 r_mcbond_it 1.159 r_angle_other_deg 0.885 r_symmetry_vdw_other 0.239 r_mcbond_other 0.218 r_symmetry_vdw_refined 0.217 r_nbd_other 0.209 r_nbd_refined 0.189 r_symmetry_hbond_refined 0.181 r_nbtor_refined 0.177 r_xyhbond_nbd_refined 0.14 r_chiral_restr 0.093 r_nbtor_other 0.084 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3475 Nucleic Acid Atoms Solvent Atoms 466 Heterogen Atoms
Software Software Software Name Purpose MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection DENZO data reduction SCALEPACK data scaling AMoRE phasing