☰ Navigation Tabs
Crystal structural of native EscU C-terminal domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8 293 NaFormate, NaCl, Tris, pH 8.0, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.15 42.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.424 α = 90 b = 55.121 β = 110.42 c = 50.257 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2006-11-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97945 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.71 50 98.5 0.056 19.9 5.8 28254 27830 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.71 1.78 90.4 0.355 5.2 2559
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.71 30 28254 27813 1406 98.31 0.188 0.188 0.187 0.1929 0.217 0.2235 RANDOM 15.875
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.21 2.38 -0.4 0.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.236 r_dihedral_angle_4_deg 15.085 r_dihedral_angle_3_deg 13.902 r_dihedral_angle_1_deg 4.858 r_scangle_it 2.023 r_mcangle_it 1.658 r_angle_refined_deg 1.38 r_scbond_it 1.256 r_angle_other_deg 1.181 r_mcbond_it 1.017
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.236 r_dihedral_angle_4_deg 15.085 r_dihedral_angle_3_deg 13.902 r_dihedral_angle_1_deg 4.858 r_scangle_it 2.023 r_mcangle_it 1.658 r_angle_refined_deg 1.38 r_scbond_it 1.256 r_angle_other_deg 1.181 r_mcbond_it 1.017 r_mcbond_other 0.276 r_symmetry_vdw_refined 0.255 r_symmetry_hbond_refined 0.248 r_nbd_refined 0.245 r_symmetry_vdw_other 0.241 r_xyhbond_nbd_refined 0.209 r_nbd_other 0.199 r_nbtor_refined 0.183 r_chiral_restr 0.112 r_nbtor_other 0.097 r_metal_ion_refined 0.096 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1732 Nucleic Acid Atoms Solvent Atoms 117 Heterogen Atoms 4
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHELX phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling SHELXD phasing