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Crystal structure of EscU C-terminal domain with N262D mutation, Space group P 21 21 21
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 6.5 293 PEG 3350, NaCl, Bis-Tris, pH 6.5, Microbatch, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.48 17.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 31.371 α = 90 b = 48.349 β = 90 c = 60.63 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.48 50 90.3 0.053 14.3 9.7 16014 14461 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.48 1.53 82.7 0.567 6.3 1277
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.48 37.8 16014 14388 716 90.52 0.216 0.216 0.215 0.2053 0.234 0.2247 RANDOM 12.043
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.93 -0.74 -0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.872 r_dihedral_angle_4_deg 26.975 r_dihedral_angle_3_deg 13.043 r_dihedral_angle_1_deg 5.73 r_scangle_it 2.572 r_scbond_it 2.071 r_angle_refined_deg 1.685 r_angle_other_deg 1.514 r_mcangle_it 1.13 r_mcbond_it 1.029
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.872 r_dihedral_angle_4_deg 26.975 r_dihedral_angle_3_deg 13.043 r_dihedral_angle_1_deg 5.73 r_scangle_it 2.572 r_scbond_it 2.071 r_angle_refined_deg 1.685 r_angle_other_deg 1.514 r_mcangle_it 1.13 r_mcbond_it 1.029 r_mcbond_other 0.264 r_nbd_refined 0.241 r_chiral_restr 0.184 r_nbtor_refined 0.182 r_nbd_other 0.17 r_symmetry_hbond_refined 0.138 r_xyhbond_nbd_refined 0.128 r_symmetry_vdw_other 0.128 r_nbtor_other 0.091 r_symmetry_vdw_refined 0.085 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 746 Nucleic Acid Atoms Solvent Atoms 96 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling PHASER phasing