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Crystal structure of Aurora-A in complex with a pentacyclic inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MUO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 7.5 291 30% PEG 3350, 0.2 M Ammonium sulfate, 0.1 M HEPES, pH 7.5, EVAPORATION, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.77 55.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.542 α = 90 b = 99.542 β = 90 c = 138.845 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-07-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97945 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 99.6 19829 19773
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.8 99.8 0.558
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1MUO 2.7 20 19829 18677 1010 99.65 0.24937 0.24769 0.24601 0.2461 0.28044 0.2788 RANDOM 62.688
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.44 2.44 -4.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.964 r_dihedral_angle_3_deg 20.406 r_dihedral_angle_4_deg 13.374 r_dihedral_angle_1_deg 5.465 r_mcangle_it 3.06 r_scangle_it 2.834 r_mcbond_it 2.432 r_scbond_it 1.882 r_angle_refined_deg 1.418 r_angle_other_deg 0.759
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.964 r_dihedral_angle_3_deg 20.406 r_dihedral_angle_4_deg 13.374 r_dihedral_angle_1_deg 5.465 r_mcangle_it 3.06 r_scangle_it 2.834 r_mcbond_it 2.432 r_scbond_it 1.882 r_angle_refined_deg 1.418 r_angle_other_deg 0.759 r_mcbond_other 0.497 r_symmetry_vdw_refined 0.285 r_symmetry_vdw_other 0.279 r_nbd_refined 0.212 r_symmetry_hbond_refined 0.187 r_nbtor_refined 0.178 r_nbd_other 0.167 r_xyhbond_nbd_refined 0.118 r_nbtor_other 0.085 r_chiral_restr 0.065 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4048 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 52
Software Software Software Name Purpose REFMAC refinement Blu-Ice data collection HKL-2000 data reduction SCALEPACK data scaling AMoRE phasing