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Histidinol-phosphate aminotransferase from Corynebacterium glutamicum in complex with PMP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 1.7M (NH4)2SO4, 0.2M Li2SO4, 0.1M Tris, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.09 60.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 195.273 α = 90 b = 85.531 β = 93.65 c = 89.431 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2006-07-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.939 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 78 98.5 0.059 0.059 15.9 3.7 133625 133625 25
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.9 97.7 0.456 0.456 2.7 3.8 19316
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 27 126870 126870 6716 98.25 0.19313 0.19313 0.19179 0.2013 0.21916 0.2249 RANDOM 21.233
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.19 -0.09 0.45 -1.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.73 r_dihedral_angle_4_deg 21.802 r_dihedral_angle_3_deg 13.305 r_dihedral_angle_1_deg 5.419 r_scangle_it 2.768 r_scbond_it 2.077 r_angle_refined_deg 1.445 r_mcangle_it 0.991 r_angle_other_deg 0.925 r_mcbond_it 0.849
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.73 r_dihedral_angle_4_deg 21.802 r_dihedral_angle_3_deg 13.305 r_dihedral_angle_1_deg 5.419 r_scangle_it 2.768 r_scbond_it 2.077 r_angle_refined_deg 1.445 r_mcangle_it 0.991 r_angle_other_deg 0.925 r_mcbond_it 0.849 r_mcbond_other 0.32 r_symmetry_vdw_other 0.288 r_nbd_refined 0.22 r_nbd_other 0.201 r_nbtor_refined 0.177 r_symmetry_hbond_refined 0.158 r_xyhbond_nbd_refined 0.153 r_xyhbond_nbd_other 0.136 r_chiral_restr 0.127 r_nbtor_other 0.087 r_symmetry_vdw_refined 0.08 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8424 Nucleic Acid Atoms Solvent Atoms 776 Heterogen Atoms 102
Software Software Software Name Purpose REFMAC refinement DNA data collection MOSFLM data reduction SCALA data scaling MOLREP phasing