☰ Navigation Tabs
Drosophila melanogaster (6-4) photolyase H365N mutant bound to ds DNA with a T-T (6-4) photolesion and cofactor F0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.6 293 15-25% PEG1500, 0.1 M MIB, pH 8.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.4 48.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.47 α = 90 b = 89.51 β = 90 c = 89.34 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MARMOSAIC 225 mm CCD Dynamically bendable mirror 2008-02-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.97895 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 20 89.2 0.089 17.8 5.7 10625 10625 65.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.2 3.3 52.2 0.308 3.1 526
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 3.2 19.87 10463 10463 549 93 0.27526 0.27526 0.27241 0.2606 0.3291 0.3151 RANDOM 49.849
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.23 -1.04 4.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.89 r_dihedral_angle_3_deg 13.632 r_dihedral_angle_4_deg 11.565 r_dihedral_angle_1_deg 4.166 r_angle_refined_deg 0.881 r_nbtor_refined 0.294 r_nbd_refined 0.152 r_xyhbond_nbd_refined 0.114 r_symmetry_vdw_refined 0.098 r_symmetry_hbond_refined 0.067
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.89 r_dihedral_angle_3_deg 13.632 r_dihedral_angle_4_deg 11.565 r_dihedral_angle_1_deg 4.166 r_angle_refined_deg 0.881 r_nbtor_refined 0.294 r_nbd_refined 0.152 r_xyhbond_nbd_refined 0.114 r_symmetry_vdw_refined 0.098 r_symmetry_hbond_refined 0.067 r_chiral_restr 0.054 r_bond_refined_d 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_refined r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4117 Nucleic Acid Atoms 609 Solvent Atoms 12 Heterogen Atoms 79
Software Software Software Name Purpose REFMAC refinement MAR345 data collection XDS data reduction XSCALE data scaling REFMAC phasing