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Proteinase K by Classical hanging drop method after the fourth step of high X-Ray dose on ESRF ID23-1 beamline
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 20mg/ml of protein in 25mM HEPES, pH7.0, reservoir solution composed by 25mM HEPES and 400mM Na/K tartrate at pH7.0. Onto the siliconized glass cover slides were mixed 4 microL of protein solution with 4 microL of reservoir solution., VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.05 40.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.963 α = 90 b = 67.963 β = 90 c = 102.809 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-02-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.97625 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 56.705 98.9 0.173 0.173 3.8 4.6 11070
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.42 99.9 0.639 0.639 1 4.6 1614
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 35.11 11059 527 98.14 0.163 0.161 0.1612 0.211 0.2113 RANDOM 15.784
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.21 -0.21 0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.656 r_dihedral_angle_4_deg 22.21 r_dihedral_angle_3_deg 15.964 r_dihedral_angle_1_deg 6.35 r_scangle_it 2.762 r_mcangle_it 2.356 r_metal_ion_refined 2.068 r_scbond_it 1.863 r_angle_refined_deg 1.76 r_mcbond_it 1.496
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.656 r_dihedral_angle_4_deg 22.21 r_dihedral_angle_3_deg 15.964 r_dihedral_angle_1_deg 6.35 r_scangle_it 2.762 r_mcangle_it 2.356 r_metal_ion_refined 2.068 r_scbond_it 1.863 r_angle_refined_deg 1.76 r_mcbond_it 1.496 r_symmetry_hbond_refined 0.53 r_symmetry_vdw_refined 0.349 r_nbtor_refined 0.317 r_xyhbond_nbd_refined 0.236 r_nbd_refined 0.228 r_chiral_restr 0.112 r_bond_refined_d 0.019 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2021 Nucleic Acid Atoms Solvent Atoms 198 Heterogen Atoms 1
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection