☰ Navigation Tabs
Crystal Structure of a Dimeric Cytochrome cb562 Assembly Induced by Copper Coordination
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 100 mM Hepes, 25% PEG 3350, 200 mM CaCl2, 17.8 mM CuSO4, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.2 44.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.566 α = 90 b = 89.504 β = 111.01 c = 52.019 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC Quantum 325 2008-03-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 1.008 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.72 50 98.3 0.075 5.7 42391 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.72 1.78 100 0.209 8.7 5.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.72 32.92 4302 39307 3049 98.3 0.19783 0.19783 0.1943 0.2367 0.24378 RANDOM 24.014
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.387 r_dihedral_angle_3_deg 16.284 r_dihedral_angle_4_deg 9.625 r_dihedral_angle_1_deg 4.488 r_scangle_it 3.105 r_scbond_it 2.061 r_angle_refined_deg 1.223 r_mcangle_it 1.009 r_mcbond_it 0.722 r_nbtor_refined 0.286
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.387 r_dihedral_angle_3_deg 16.284 r_dihedral_angle_4_deg 9.625 r_dihedral_angle_1_deg 4.488 r_scangle_it 3.105 r_scbond_it 2.061 r_angle_refined_deg 1.223 r_mcangle_it 1.009 r_mcbond_it 0.722 r_nbtor_refined 0.286 r_symmetry_vdw_refined 0.263 r_nbd_refined 0.225 r_symmetry_hbond_refined 0.177 r_xyhbond_nbd_refined 0.154 r_metal_ion_refined 0.119 r_symmetry_metal_ion_refined 0.088 r_chiral_restr 0.086 r_bond_refined_d 0.012 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3275 Nucleic Acid Atoms Solvent Atoms 511 Heterogen Atoms 182
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing