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Crystal structure of human Prostasin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5.8 298 100mM Bis-Tris pH 5.8, 21-26% PEG 3350, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.18 43.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.988 α = 90 b = 56.241 β = 90 c = 82.96 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS 2008-04-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 50 99.3 0.053 15 4.2 44561
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.45 1.5 96.9 0.33 3.4 4263
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.45 46.57 44493 2253 99.21 0.191 0.19 0.1874 0.213 0.2121 RANDOM 17.362
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.93 0.3 -1.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.879 r_dihedral_angle_3_deg 11.736 r_dihedral_angle_4_deg 10.375 r_dihedral_angle_1_deg 5.159 r_scangle_it 1.675 r_scbond_it 1.603 r_rigid_bond_restr 1.463 r_sphericity_free 1.385 r_sphericity_bonded 1.041 r_angle_refined_deg 1.036
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.879 r_dihedral_angle_3_deg 11.736 r_dihedral_angle_4_deg 10.375 r_dihedral_angle_1_deg 5.159 r_scangle_it 1.675 r_scbond_it 1.603 r_rigid_bond_restr 1.463 r_sphericity_free 1.385 r_sphericity_bonded 1.041 r_angle_refined_deg 1.036 r_mcangle_it 0.79 r_mcbond_it 0.498 r_nbtor_refined 0.303 r_nbd_refined 0.18 r_symmetry_vdw_refined 0.14 r_symmetry_hbond_refined 0.099 r_xyhbond_nbd_refined 0.079 r_chiral_restr 0.065 r_bond_refined_d 0.006 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1957 Nucleic Acid Atoms Solvent Atoms 408 Heterogen Atoms 2
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction REFMAC phasing