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Crystal structure of invasion associated protein b from bartonella henselae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 294 200mM Trimethylamine N-oxide, 100MM TRIS-HCL, PH 8, 20% PEG MME 2000, 10% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K, pH 8.00
Crystal Properties Matthews coefficient Solvent content 2.66 53.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.707 α = 90 b = 139.951 β = 90 c = 179.075 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD MAR CCD 165 mm 2008-06-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 50 99.7 0.12 4 6.4 100682 -0.5 52.606
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.43 98.7 0.92 0.5 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.35 20 96697 3000 99.27 0.23591 0.23501 0.2318 0.26524 0.2632 RANDOM 51.596
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.44 -0.22 -0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.9 r_dihedral_angle_4_deg 20.964 r_dihedral_angle_3_deg 17.548 r_scangle_it 7.713 r_dihedral_angle_1_deg 5.148 r_scbond_it 4.879 r_mcangle_it 4.345 r_mcbond_it 2.662 r_angle_refined_deg 1.249 r_nbtor_refined 0.295
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.9 r_dihedral_angle_4_deg 20.964 r_dihedral_angle_3_deg 17.548 r_scangle_it 7.713 r_dihedral_angle_1_deg 5.148 r_scbond_it 4.879 r_mcangle_it 4.345 r_mcbond_it 2.662 r_angle_refined_deg 1.249 r_nbtor_refined 0.295 r_symmetry_vdw_refined 0.161 r_xyhbond_nbd_refined 0.148 r_nbd_refined 0.131 r_symmetry_hbond_refined 0.108 r_chiral_restr 0.076 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13106 Nucleic Acid Atoms Solvent Atoms 416 Heterogen Atoms 108
Software Software Software Name Purpose SHELXCD phasing SHELXD phasing SHELXE model building RESOLVE model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling RESOLVE phasing