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Structure of AuroraA with pyridyl-pyrimidine urea inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 4.6 273 0.1 M Sodium Acetate, 0.4 M Ammonium Sulfate, 15% PEG 4000, pH 4.6, VAPOR DIFFUSION, temperature 273K
Crystal Properties Matthews coefficient Solvent content 2.27 45.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.511 α = 90 b = 125.448 β = 90 c = 75.752 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 130 IMAGE PLATE RIGAKU RAXIS IV++ osmic 2004-05-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.29 50 89.8 0.062 21.1 3.6 24589 22081 -3 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.29 2.41 60.6 0.316 3.4 3.4 1453
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.29 29.63 24339 20740 1110 85.21 0.26001 0.26001 0.25808 0.2515 0.29467 RANDOM 35.15
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.37 -1.36 2.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.058 r_dihedral_angle_4_deg 16.341 r_dihedral_angle_3_deg 15.007 r_dihedral_angle_1_deg 4.607 r_scangle_it 1.336 r_angle_refined_deg 1.018 r_scbond_it 0.854 r_mcangle_it 0.784 r_mcbond_it 0.432 r_nbtor_refined 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.058 r_dihedral_angle_4_deg 16.341 r_dihedral_angle_3_deg 15.007 r_dihedral_angle_1_deg 4.607 r_scangle_it 1.336 r_angle_refined_deg 1.018 r_scbond_it 0.854 r_mcangle_it 0.784 r_mcbond_it 0.432 r_nbtor_refined 0.298 r_symmetry_hbond_refined 0.225 r_symmetry_vdw_refined 0.183 r_nbd_refined 0.175 r_xyhbond_nbd_refined 0.131 r_chiral_restr 0.059 r_bond_refined_d 0.007 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3846 Nucleic Acid Atoms Solvent Atoms 60 Heterogen Atoms 82
Software Software Software Name Purpose CrystalClear data collection AMoRE phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling