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Crystal structure of eonyl-(acyl carrier protein) reductase from burkholderia pseudomallei 1719b
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QSG pdb entry 1qsg, tetramer, modified
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 298 JCSG+ SCREEN: 10% PEG 6000, 100MM HEPES PH 7.0, VAPOR DIFFUSION, TEMPERATURE 298K, pH 7.00, VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 2.37 48.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.195 α = 90 b = 122.195 β = 90 c = 139.255 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR 300 2008-08-01 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 69.673 95.5 0.142 0.142 3.7 4.7 82541
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 97.7 0.598 0.598 1 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MR, MR THROUGHOUT pdb entry 1qsg, tetramer, modified 1.9 69.673 82036 82036 4094 94.6 0.178 0.176 0.1809 0.218 0.2214 RANDOM 17.54
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.69 0.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.047 r_dihedral_angle_4_deg 17.587 r_dihedral_angle_3_deg 12.12 r_dihedral_angle_1_deg 6.17 r_scangle_it 4.071 r_scbond_it 2.534 r_mcangle_it 1.571 r_angle_refined_deg 1.507 r_angle_other_deg 0.985 r_mcbond_it 0.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.047 r_dihedral_angle_4_deg 17.587 r_dihedral_angle_3_deg 12.12 r_dihedral_angle_1_deg 6.17 r_scangle_it 4.071 r_scbond_it 2.534 r_mcangle_it 1.571 r_angle_refined_deg 1.507 r_angle_other_deg 0.985 r_mcbond_it 0.89 r_mcbond_other 0.242 r_chiral_restr 0.096 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7399 Nucleic Acid Atoms Solvent Atoms 820 Heterogen Atoms 1
Software Software Software Name Purpose PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling