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Crystal Structure of the inhibitor Darunavir (DRV) in complex with a multi-drug resistant HIV-1 protease variant (L10F/G48V/I54V/V64I/V82A) (Refer: FLAP+ in citation.)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 298 Refer citation, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3 58.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.013 α = 90 b = 92.013 β = 90 c = 106.161 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 133 IMAGE PLATE RIGAKU RAXIS IV M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.97 40 95.8 0.05 15.4 34578 34578
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.97 40 34447 1713 95.59 0.211 0.209 0.258 0.2267 RANDOM 13.827
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.39 0.19 0.39 -0.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.761 r_dihedral_angle_4_deg 15.716 r_dihedral_angle_3_deg 13.938 r_dihedral_angle_1_deg 6.67 r_scangle_it 2.424 r_scbond_it 1.711 r_angle_refined_deg 1.12 r_angle_other_deg 1.06 r_mcangle_it 0.987 r_mcbond_it 0.897
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.761 r_dihedral_angle_4_deg 15.716 r_dihedral_angle_3_deg 13.938 r_dihedral_angle_1_deg 6.67 r_scangle_it 2.424 r_scbond_it 1.711 r_angle_refined_deg 1.12 r_angle_other_deg 1.06 r_mcangle_it 0.987 r_mcbond_it 0.897 r_symmetry_hbond_refined 0.255 r_nbd_other 0.224 r_xyhbond_nbd_refined 0.217 r_symmetry_vdw_refined 0.203 r_symmetry_vdw_other 0.2 r_nbd_refined 0.195 r_xyhbond_nbd_other 0.182 r_nbtor_refined 0.181 r_mcbond_other 0.116 r_nbtor_other 0.087 r_chiral_restr 0.074 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2948 Nucleic Acid Atoms Solvent Atoms 321 Heterogen Atoms 133
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing REFMAC refinement PDB_EXTRACT data extraction