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Crystal structure of Cgi121/Bud32/Kae1 complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2K8Y ARCHEAL CGI121 AND ARCHEAL KAE1/BUD32 STRUCTURES experimental model PDB 3EN9 ARCHEAL CGI121 AND ARCHEAL KAE1/BUD32 STRUCTURES
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 0.1 M MES and 10-15% PEG 3000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.76 55.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.99 α = 90 b = 106.91 β = 90 c = 209.48 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRRORS 2007-02-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.6 208.84 99.8 0.0747 0.0747 11.96 1.86 20565 3.21
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.6 3.7 0.2171 0.2171 3.4 1.9 1582
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT ARCHEAL CGI121 AND ARCHEAL KAE1/BUD32 STRUCTURES 3.6 94.92 20608 19689 1052 99.97 0.27371 0.27109 0.2869 0.3241 0.3436 RANDOM 103.972
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -12.94 8.77 4.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.467 r_dihedral_angle_3_deg 20.91 r_dihedral_angle_4_deg 17.381 r_dihedral_angle_1_deg 5.726 r_angle_refined_deg 1.369 r_scangle_it 0.671 r_scbond_it 0.372 r_mcangle_it 0.293 r_mcbond_it 0.151 r_chiral_restr 0.078
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.467 r_dihedral_angle_3_deg 20.91 r_dihedral_angle_4_deg 17.381 r_dihedral_angle_1_deg 5.726 r_angle_refined_deg 1.369 r_scangle_it 0.671 r_scbond_it 0.372 r_mcangle_it 0.293 r_mcbond_it 0.151 r_chiral_restr 0.078 r_bond_refined_d 0.047 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9998 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 144
Software Software Software Name Purpose CBASS data collection PHASER phasing REFMAC refinement XDS data reduction XDS data scaling