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Structure of human MDMX in complex with high affinity peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3DAB PDB ENTRY 3DAB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.3 290 4.3M NaCl, 100mM Hepes, pH7.3, VAPOR DIFFUSION, SITTING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 1.89 35.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.23 α = 90 b = 30.95 β = 124.41 c = 50.42 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD MARRESEARCH monochromator 2008-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 30 84.1 17646 14843 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.5 46.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3DAB 1.4 15 2 17646 13765 768 84.53 0.1881 0.18286 0.17936 0.1734 0.24708 0.2358 RANDOM 19.143
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.91 -0.29 1.37 -0.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.049 r_dihedral_angle_4_deg 21.448 r_dihedral_angle_3_deg 13.869 r_dihedral_angle_1_deg 13.028 r_scangle_it 3.493 r_sphericity_free 3.27 r_sphericity_bonded 2.823 r_scbond_it 2.292 r_mcangle_it 1.552 r_rigid_bond_restr 1.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.049 r_dihedral_angle_4_deg 21.448 r_dihedral_angle_3_deg 13.869 r_dihedral_angle_1_deg 13.028 r_scangle_it 3.493 r_sphericity_free 3.27 r_sphericity_bonded 2.823 r_scbond_it 2.292 r_mcangle_it 1.552 r_rigid_bond_restr 1.31 r_angle_refined_deg 1.304 r_mcbond_it 0.916 r_chiral_restr 0.11 r_bond_refined_d 0.008 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 818 Nucleic Acid Atoms Solvent Atoms 165 Heterogen Atoms 5
Software Software Software Name Purpose MAR345dtb data collection MOLREP phasing REFMAC refinement XDS data reduction XSCALE data scaling