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Improved Structure of the Unliganded Simian Immunodeficiency Virus gp120 Core
Crystallization Crystal Properties Matthews coefficient Solvent content 4.66 73.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.048 α = 90 b = 108.048 β = 90 c = 117.701 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT 4 25.58 5842 279 100 0.34618 0.34618 0.34581 0.3466 0.35351 0.356 RANDOM 131.846
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.61 -0.61 1.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 45.59 r_dihedral_angle_3_deg 24.328 r_dihedral_angle_4_deg 17.95 r_dihedral_angle_1_deg 7.717 r_angle_refined_deg 2.055 r_symmetry_vdw_refined 0.43 r_nbtor_refined 0.342 r_symmetry_hbond_refined 0.322 r_nbd_refined 0.307 r_xyhbond_nbd_refined 0.261
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 45.59 r_dihedral_angle_3_deg 24.328 r_dihedral_angle_4_deg 17.95 r_dihedral_angle_1_deg 7.717 r_angle_refined_deg 2.055 r_symmetry_vdw_refined 0.43 r_nbtor_refined 0.342 r_symmetry_hbond_refined 0.322 r_nbd_refined 0.307 r_xyhbond_nbd_refined 0.261 r_chiral_restr 0.173 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2470 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 670
Software Software Software Name Purpose REFMAC refinement