☰ Navigation Tabs
Glutaconyl-coA decarboxylase A subunit from Clostridium symbiosum apoprotein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1PIX
Crystallization Crystal Properties Matthews coefficient Solvent content 2.36 47.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.05 α = 90 b = 143.53 β = 90 c = 167.52 γ = 90
Symmetry Space Group F 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2007-02-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 0.80150 EMBL/DESY, HAMBURG X13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 32.987 99.9 0.074 0.074 9.07 6.1 24154
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.53 100 0.334 0.334 2.3 6.2 3477
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1PIX 2.4 32.48 24153 1002 99.81 0.187 0.185 0.1819 0.225 0.2188 RANDOM 31.586
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.05 0.55 1.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.972 r_dihedral_angle_4_deg 13.466 r_dihedral_angle_3_deg 13.163 r_dihedral_angle_1_deg 6.66 r_scangle_it 1.585 r_angle_refined_deg 1.095 r_scbond_it 0.988 r_mcangle_it 0.831 r_mcbond_it 0.481 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.972 r_dihedral_angle_4_deg 13.466 r_dihedral_angle_3_deg 13.163 r_dihedral_angle_1_deg 6.66 r_scangle_it 1.585 r_angle_refined_deg 1.095 r_scbond_it 0.988 r_mcangle_it 0.831 r_mcbond_it 0.481 r_nbtor_refined 0.307 r_nbd_refined 0.199 r_symmetry_vdw_refined 0.172 r_symmetry_hbond_refined 0.143 r_xyhbond_nbd_refined 0.131 r_chiral_restr 0.076 r_bond_refined_d 0.007 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4202 Nucleic Acid Atoms Solvent Atoms 201 Heterogen Atoms 5
Software Software Software Name Purpose SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction