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Crystal Structure of Beta-Lactamse Inhibitory Protein-Like Protein (BLP) at 1.05 Angstrom Resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 microbatch under oil 6.5 294 starting concentration as follows: 5.5 mg/ml protein, 10% PEG 8000, 0.1 M magnesium acetate tetrahydrate, 50 mM sodium cacodylate, 75 mM NaCl, 15 mM tris, pH 6.5, microbatch under oil, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.08 40.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.771 α = 90 b = 99.925 β = 101.26 c = 41.643 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM Q315r 2006-02-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.11588 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.05 49.94 86.1 0.06 6.5 9.9 114297
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.05 1.077 65.9 0.265 2.3 3.6 5662
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.05 49.9 114227 5754 85.84 0.126 0.125 0.1259 0.154 0.1543 RANDOM 11.089
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.17 0.2 0.01 0.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.629 r_dihedral_angle_4_deg 14.121 r_dihedral_angle_3_deg 12.438 r_dihedral_angle_1_deg 6.578 r_sphericity_free 6.069 r_sphericity_bonded 4.046 r_scangle_it 3.161 r_scbond_it 2.528 r_mcangle_it 1.984 r_angle_refined_deg 1.533
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.629 r_dihedral_angle_4_deg 14.121 r_dihedral_angle_3_deg 12.438 r_dihedral_angle_1_deg 6.578 r_sphericity_free 6.069 r_sphericity_bonded 4.046 r_scangle_it 3.161 r_scbond_it 2.528 r_mcangle_it 1.984 r_angle_refined_deg 1.533 r_mcbond_it 1.389 r_rigid_bond_restr 1.359 r_angle_other_deg 0.607 r_symmetry_vdw_other 0.418 r_nbd_other 0.386 r_nbtor_refined 0.306 r_symmetry_hbond_refined 0.286 r_nbd_refined 0.207 r_symmetry_vdw_refined 0.202 r_xyhbond_nbd_refined 0.173 r_chiral_restr 0.104 r_bond_refined_d 0.012 r_gen_planes_refined 0.01 r_bond_other_d 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2647 Nucleic Acid Atoms Solvent Atoms 784 Heterogen Atoms 16
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction