☰ Navigation Tabs
Toxin fold as basis for microbial attack and plant defense
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 0.1M HEPES-NaOH, 5.0M NaCl, 2% DTT, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.54 51.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.94 α = 90 b = 51.94 β = 90 c = 175.034 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate Osmic VariMaxHF mirror 2005-08-02 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2005-10-23 MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418 2 SYNCHROTRON SLS BEAMLINE X10SA 0.97644, 0.97936, 0.96862 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.9 25 97.4 0.044 6.2 19827 19306 -3 25.481
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 2 90.1 0.331 0.331 4.7 4.4 2501
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 24.9 19825 19294 965 100 0.181 0.179 0.1792 0.222 0.2227 RANDOM 20.16
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.41 0.41 -0.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.806 r_dihedral_angle_4_deg 14.883 r_dihedral_angle_3_deg 12.924 r_dihedral_angle_1_deg 6.927 r_scangle_it 3.055 r_scbond_it 2.108 r_angle_refined_deg 1.521 r_mcangle_it 1.288 r_mcbond_it 0.796 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.806 r_dihedral_angle_4_deg 14.883 r_dihedral_angle_3_deg 12.924 r_dihedral_angle_1_deg 6.927 r_scangle_it 3.055 r_scbond_it 2.108 r_angle_refined_deg 1.521 r_mcangle_it 1.288 r_mcbond_it 0.796 r_nbtor_refined 0.309 r_symmetry_vdw_refined 0.255 r_nbd_refined 0.209 r_symmetry_hbond_refined 0.173 r_xyhbond_nbd_refined 0.144 r_chiral_restr 0.102 r_bond_refined_d 0.014 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1687 Nucleic Acid Atoms Solvent Atoms 234 Heterogen Atoms 9
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345dtb data collection XDS data reduction SnB phasing