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Structure of the genotype 2B HCV polymerase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1C2P
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.1 300 6.5mg/ml enzyme, 10% PEG4K, 100mM NaCitrate, 200mM NaCl, 5mM DTT , pH 6.1, VAPOR DIFFUSION, SITTING DROP, temperature 300K
Crystal Properties Matthews coefficient Solvent content 2.67 53.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 153.251 α = 90 b = 64.497 β = 90.16 c = 135.583 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-02-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20 97.3 0.073 3.4 104470 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.949 87 0.366 3 3 9159
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 19.96 96413 5127 100 0.16868 0.16646 0.177 0.21006 0.2176 RANDOM 20.996
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.32 0.4 0.22 0.1
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.108 r_dihedral_angle_1_deg 5.638 r_scbond_it 3.787 r_mcangle_it 2.446 r_angle_refined_deg 1.87 r_mcbond_it 1.344 r_angle_other_deg 0.976 r_symmetry_vdw_other 0.275 r_nbd_other 0.25 r_nbd_refined 0.22
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.108 r_dihedral_angle_1_deg 5.638 r_scbond_it 3.787 r_mcangle_it 2.446 r_angle_refined_deg 1.87 r_mcbond_it 1.344 r_angle_other_deg 0.976 r_symmetry_vdw_other 0.275 r_nbd_other 0.25 r_nbd_refined 0.22 r_xyhbond_nbd_refined 0.183 r_symmetry_vdw_refined 0.155 r_symmetry_hbond_refined 0.152 r_chiral_restr 0.136 r_nbtor_other 0.089 r_bond_refined_d 0.024 r_gen_planes_refined 0.01 r_gen_planes_other 0.007 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8746 Nucleic Acid Atoms Solvent Atoms 825 Heterogen Atoms
Software Software Software Name Purpose DNA data collection MOLREP phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling