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AmpC beta-lactamase in complex with Fragment-based Inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 400mM KPi at pH 8.5 with 25% PEG3350, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.55 51.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.166 α = 90 b = 78.329 β = 116.59 c = 97.711 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2008-01-25 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 97.9 0.083 13.95 3.6 72632
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.86 99.9 0.419 3.6 7383
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.8 32.5 72425 3654 97.3 0.212 0.21 0.2089 0.246 0.2436 RANDOM 27.452
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 0.07 -0.01 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.492 r_dihedral_angle_4_deg 16.832 r_dihedral_angle_3_deg 14.993 r_dihedral_angle_1_deg 5.763 r_scangle_it 1.646 r_angle_refined_deg 1.293 r_scbond_it 1.165 r_mcangle_it 0.783 r_mcbond_it 0.605 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.492 r_dihedral_angle_4_deg 16.832 r_dihedral_angle_3_deg 14.993 r_dihedral_angle_1_deg 5.763 r_scangle_it 1.646 r_angle_refined_deg 1.293 r_scbond_it 1.165 r_mcangle_it 0.783 r_mcbond_it 0.605 r_nbtor_refined 0.303 r_nbd_refined 0.193 r_symmetry_vdw_refined 0.178 r_symmetry_hbond_refined 0.161 r_xyhbond_nbd_refined 0.106 r_chiral_restr 0.078 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5840 Nucleic Acid Atoms Solvent Atoms 614 Heterogen Atoms 87
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction