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Crystal Structure Analysis of S. Pombe ATL in complex with DNA
Crystallization Crystal Properties Matthews coefficient Solvent content 2.83 56.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.728 α = 90 b = 59.728 β = 90 c = 238.028 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2008-01-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 40 6342
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.7 39.04 6342 373 93.55 0.23091 0.227 0.2318 0.29619 0.3039 RANDOM 39.897
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.44 1.22 2.44 -3.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.677 r_dihedral_angle_4_deg 26.183 r_dihedral_angle_3_deg 24.865 r_dihedral_angle_1_deg 11.007 r_scangle_it 5.973 r_angle_refined_deg 4.544 r_scbond_it 4.409 r_mcangle_it 2.942 r_mcbond_it 1.811 r_nbtor_refined 0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.677 r_dihedral_angle_4_deg 26.183 r_dihedral_angle_3_deg 24.865 r_dihedral_angle_1_deg 11.007 r_scangle_it 5.973 r_angle_refined_deg 4.544 r_scbond_it 4.409 r_mcangle_it 2.942 r_mcbond_it 1.811 r_nbtor_refined 0.39 r_symmetry_vdw_refined 0.38 r_nbd_refined 0.359 r_xyhbond_nbd_refined 0.234 r_chiral_restr 0.203 r_symmetry_hbond_refined 0.202 r_bond_refined_d 0.042 r_gen_planes_refined 0.018 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 890 Nucleic Acid Atoms 528 Solvent Atoms 23 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction