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Crystal structure of GNA1946
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 3.5 293 0.1M Citrc Acid, 2M ammonium sulfate, 0.5% N-Dodecyl-beta-D-Maltoside, pH 3.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.94 58.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.395 α = 90 b = 122.809 β = 90 c = 160.906 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS HTC 2008-11-02 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MAR CCD 165 mm 2008-12-30 M SINGLE WAVELENGTH 3 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS HTC 2009-03-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5415 2 SYNCHROTRON BSRF BEAMLINE 3W1A 0.9791 BSRF 3W1A 3 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5415
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2,3 2.25 50 94.4 0.098 2.1 4.6 101618 96412 2 2.5 22.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2,3 2.25 2.35 94.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.25 21.55 2 101618 96412 4872 94.4 0.206 0.206 0.2065 0.239 0.2395 RANDOM 28.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 8.4 -6.14 -2.26
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23.4 c_scangle_it 2.95 c_scbond_it 2.01 c_mcangle_it 1.85 c_angle_deg 1.4 c_mcbond_it 1.15 c_improper_angle_d 0.89 c_bond_d 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11366 Nucleic Acid Atoms Solvent Atoms 679 Heterogen Atoms 134
Software Software Software Name Purpose HKL-2000 data collection SHELXS phasing CNS refinement HKL-2000 data reduction HKL-2000 data scaling