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Crystal structure of a putative branched-chain amino acid ABC transporter from Silicibacter pomeroyi
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 4.6 294 100mM sodium acetate pH 4.6, 25% PEG MME 550, vapor diffusion, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.61 52.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.882 α = 90 b = 121.628 β = 90 c = 122.876 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2009-04-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97958 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 86.442 94.3 0.09 0.09 15.4 9.1 104179 98241 14.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.79 82 0.434 0.434 3.6 5.9 12230
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 20 104137 98170 4904 94.27 0.16 0.159 0.1716 0.185 0.1976 RANDOM 19.74
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.56 -0.22 0.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.67 r_dihedral_angle_4_deg 16.707 r_dihedral_angle_3_deg 11.955 r_dihedral_angle_1_deg 6.025 r_scangle_it 3.364 r_scbond_it 2.267 r_angle_refined_deg 1.337 r_mcangle_it 1.273 r_angle_other_deg 0.925 r_mcbond_it 0.713
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.67 r_dihedral_angle_4_deg 16.707 r_dihedral_angle_3_deg 11.955 r_dihedral_angle_1_deg 6.025 r_scangle_it 3.364 r_scbond_it 2.267 r_angle_refined_deg 1.337 r_mcangle_it 1.273 r_angle_other_deg 0.925 r_mcbond_it 0.713 r_mcbond_other 0.201 r_chiral_restr 0.083 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6123 Nucleic Acid Atoms Solvent Atoms 793 Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction SHELXCD phasing SHELXE model building